Publications

Edwards, L.; Pine, K.; Lipp, I.; EBC Consortium; Kirilina, E.; Helms, G.; Weiskopf, N.: Analytical dual flip angle R1 calculation outside the small-angle regime. Magnetic Resonance in Medicine 95 (4), pp. 2420 - 2428 (2026)

Emmenegger, T. M.; David, G.; Mohammadi, S.; Ziegler, G.; Callaghan, M. F.; Thompson, A.; Friston, K. J.; Weiskopf, N.; Killeen, T.; Freund, P.: Neuronal plasticity during motor rehabilitation training after spinal cord injury. Communications Biology (2026)

Alkemade, A.; Bazin, P.; Kirilina, E.; Pine, K.; Herrler, A.; Bleijs, R. L. A. W.; Kros, J. M.; Groenewegen, L.; Vermorgen, S. M. M.; Jonkman, L. E. et al.; Swaab, D. F.; Balesar, R.; Weiskopf, N.; Forstmann, B. U.: A unified 3D reconstruction of microscopy and MRI in a brain showing Alzheimer's disease‐related neuropathology. Brain Pathology 36 (2), e70039 (2026)

Jeong, G.; Soch, J.; Trampel, R.; Nieder, A.; Skeide, M. A.: Population coding for visual and auditory quantity in human numerotopic maps. Communications Biology (2026)

Li, Y.; Lorenz, R.; Ouyang, G.: Behavioral variability and neural cross-frequency coupling distinguish working memory maintenance from manipulation. Imaging Neuroscience 4, IMAG.a.1155 (2026)

Schmidt, J.; Scheibe, P.; Carreto Fidalgo, D.; Marek, A.; Trampel, R.; Weiskopf, N.: Fast and scalable joint-LORAKS reconstruction and data-driven sampling optimisation of high-dimensional MRI datasets using a GPU-accelerated and learning-free differentiable framework: PyLORAKS. Aperture Neuro 6 (2026)

Haenelt, D.; Chaimow, D.; Schmidt, M. E.; Nasr, S.; Weiskopf, N.; Trampel, R.: Decoding of columnar-level organization across cortical depth using BOLD- and CBV-fMRI at 7 T. Imaging Neuroscience 4, IMAG.a.1124 (2026)

Salmona, A.; Bédard, S.; Valošek, J.; Ost, K.; Bouthillier, M.; David, G.; Seif, M.; Curt, A.; Pfender, N.; Hupp, M. et al.; Freund, P.; Horák, T.; Kudlička, P.; Bednařík, J.; Muhammad, F.; Smith, Z. A.; Cohen-Adad, J.: Automated robust segmentation of the spinal canal on MRI. European Journal of Radiology Artificial Intelligence, 100075 (2026)

Karthik, E. N.; Bédard, S.; Valošek, J.; Aigner, C. S.; Bannier, E.; Bednařík, J.; Callot, V.; Combes, A.; Curt, A.; David, G. et al.; Eippert, F.; Farner, L.; Fehlings, M. G.; Freund, P.; Granberg, T.; Granziera, C.; Horn, U.; Horák, T.; Humphreys, S.; Hupp, M.; Kerbrat, A.; Kinany, N.; Kolind, S.; Kudlička, P.; Lebret, A.; Lee, L. E.; Mainero, C.; Martin, A. R.; McGrath, M.; Nair, G.; O'Grady, K. P.; Oh, J.; Ouellette, R.; Pfender, N.; Pfyffer, D.; Pradat, P.-F.; Prat, A.; Pravatà, E.; Reich, D. S.; Ricchi, I.; Rotem-Kohavi, N.; Schading-Sassenhausen, S.; Seif, M.; Smith, A.; Smith, S. A.; Sweeney, G.; Tam, R.; Traboulsee, A.; Treaba, C. A.; Tsagkas, C.; Vavasour, Z.; Van De Ville, D.; Weber Ii, K. A.; Chandar, S.; Cohen-Adad, J.: Monitoring morphometric drift in lifelong learning segmentation of the spinal cord. Imaging Neuroscience 4, IMAG.a.1105 (2026)

Gkotsoulias, D. G.; Schönenberger, L.; Leupold, J.; Callegari, I.; Bahn, E.; Stadelmann, C.; von Elverfeldt, D.; Kiselev, V.; Weigel, M.; Granziera, C.: Bridging mesoscopic and microscopic scales in multiple sclerosis: Post mortem brain block multi-contrast 9.4T MRI and histology quantification. STAR Protocols 6 (4), 104203 (2025)

Schmidt, M.; Aganj, I.; Stockmann, J.; Bilgic, B.; Chang, Y.; Hoge, W. S.; Kirilina, E.; Weiskopf, N.; Nasr, S.: Unraveling the mesoscale resting-state functional connectivity of ocular dominance columns in humans using high-resolution functional MRI. Communications Biology 8, 1708 (2025)

Chauvel, M.; Uszynski, I.; Poupon, C.; Hopkins, W. D.: Oro-facial and manual motor functions are differentially associated with short-fiber white matter connectivity within the chimpanzee "homunculus". Cerebral Cortex 35 (10), bhaf269 (2025)

Jeong, G.; Soch, J.; Trampel, R.; Nieder, A.; Skeide, M. A.: High-field fMRI at 7 Tesla reveals topographic responses tuned to number in the developing human brain. Developmental Cognitive Neuroscience 75, 101598 (2025)

Brum, W. S.; Montoliu-Gaya, L.; Brinkmalm, G.; Piotrowska, D.; Camporesi, E.; Jäger, C.; Isaksson, H. S.; Martin, S.; Kindberg, J.; Lantero-Rodriguez, J. et al.; Ferrari-Souza, J. P.; Moscoso, A.; Benedet , A. L.; Janelidze, S.; Gobom, J.; Zetterberg, H.; Hansson, O.; Zimmer, E. R.; Ashton, N. J.; Arendt, T.; Lashley, T.; Stieler, J. T.; Holzer, M.; Fröbert, O.; Blennow, K.: Reversible tau hyperphosphorylation in hibernation: A blood biomarker and brain tissue study. Acta Neuropathologica 150 (1), 36 (2025)

Wallstein, N.; Capucciati, A.; Pöppl, A.; Schnohr, C. S.; Sturini, M.; Pampel, A.; Jäger, C.; Zecca, L.; Zucca, F. A.; Monzani, E. et al.; Casella, L.; Möller, H. E.: Modeling midbrain and brainstem neuromelanins to characterize metal binding and associated MRI contrast in Parkinson's and Alzheimer's diseases. Angewandte Chemie International Edition 64 (41), e202509102 (2025)

Banerjee, R.; Kaptan, M.; Tinnermann, A.; Khatibi, A.; Dabbagh, A.; Büchel, C.; Kündig, C. W.; Law, C. S. W.; Pfyffer, D.; Lythgoe, D. J. et al.; Tsivaka, D.; Ville, D. V. D.; Eippert, F.; Muhammad, F.; Glover, G. H.; David, G.; Haynes, G.; Haaker, J.; Brooks, J. C. W.; Finsterbusch, J.; Martucci, K. T.; Hemmerling, K. J.; Mobarak-Abadi, M.; Hoggarth, M. A.; Howard, M. A.; Bright, M. G.; Kinany, N.; Kowalczyk, O. S.; Freund, P.; Barry, R. L.; Mackey, S.; Vahdat, S.; Schading, S.; McMahon, S. B.; Parish, T.; Marchand-Pauvert, V.; Chen, Y.; Smith, Z. A.; Ii, K. A. W.; Leener, B. D.; Cohen-Adad, J.: EPISeg: Automated segmentation of the spinal cord on echo planar images using open-access multi-center data. Imaging Neuroscience 3, IMAG.a.98 (2025)

Dermody, N.; Lorenz, R.; Goddard, E.; Villringer, A.; Woolgar, A.: Spatial and feature-selective attention interact to drive selective coding in frontoparietal cortex. Neuropsychologia 216, 109172 (2025)

Alonso-Ortiz, E.; Papp, D.; Barry, R. L.; Poëti, K.; Seifert, A. C.; Gilbert, K. M.; Lopez-Rios, N.; Paska, J.; Eippert, F.; Weiskopf, N. et al.; Beghini, L.; Graedel, N. N.; Trampel, R.; Callaghan, M. F.; Aigner, C. S.; Freund, P.; Seif, M.; Destruel, A.; Callot, V.; Vannesjo, J.; Cohen-Adad, J.: Multi-center benchmarking of cervical spinal cord RF coils for 7 T MRI: A traveling spines study. Magnetic Resonance in Medicine 94 (3), pp. 1339 - 1355 (2025)

Bédard, S.; Valošek, J.; Seif, M.; Curt, A.; Schading-Sassenhausen, S.; Pfender, N.; Freund, P.; Hupp, M.; Cohen-Adad, J.: Normalizing spinal cord compression measures in degenerative cervical myelopathy. The Spine Journal 25 (9), pp. 1951 - 1963 (2025)

Berrouschot, V.; Sonntag, M.; Reimann, K.; Jäger, C.; Martin, S.; Holzer, M.; Stieler, J. T.; Morawski, M.: Neurons ensheathed by perineuronal nets are prone to hyperphosphorylation of tau protein in the hibernating Syrian hamster brain. Scientific Reports 15 (1), 32253 (2025)