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Thierbach, K.; Bazin, P.-L.; De Back , W.; Gavriilidis, F.; Kirilina, E.; Jäger, C.; Morawski, M.; Geyer, S.; Weiskopf, N.; Scherf, N.: Combining deep learning and active contours opens the way to robust, automated analysis of brain cytoarchitectonics. BioRxiv (2018)

Shah, G.; Thierbach, K.; Schmid, B.; Reade, A.; Roeder, I.; Scherf, N.; Huisken, J.: Pan-embryo cell dynamics of germlayer formation in zebrafish. bioRxiv (2017)

Kloenne, M.; Niehaus, S.; Lampe, L.; Merola, A.; Reinelt, J.; Scherf, N.: A framework for CT image segmentation inspired by the clinical environment. arXiv (2019)