Publikationen von Davide Chiarugi

Furse, S.; Martel, C.; Willer, D. F.; Stabler, D.; Fernandez-Twinn, D. S.; Scott, J.; Patterson-Cross, R.; Watkins, A. J.; Virtue, S.; Prescott, T. A. K. et al.; Baker, E.; Chennells, J.; Vidal-Puig, A.; Ozanne, S. E.; Kite, G. C.; Vítová, M.; Chiarugi, D.; Moncur, J.; Koulman, A.; Wright, G. A.; Snowden, S. G.; Stevenson, P. C.: Systemic analysis of lipid metabolism from individuals to multi-organism systems. Molecular Omics 20 (9), S. 570 - 583 (2024)

Awad, S.; Valleriani, A.; Chiarugi, D.: A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length. NAR: Genomics and Bioinformatics 6 (2), lqae036 (2024)

D’Amore, S.; Sano, H.; Chappell, D. D. G.; Chiarugi, D.; Baker, O.; Page, K.; Ramaswami, U.; Johannesdottir, F.; Cox, T. M.; Deegan, P. et al.; Poole, K. E.; Cox, T. M.; Platt, F. M.; Banka, S.; Chakrapani, A.; Deegan, P. B.; Geberhiwot, T.; Hughes, D. A.; Jones, S.; Lachmann, R. H.; Santra, S.; Sharma, R.; Vellodi, A.: Radiographic cortical thickness index predicts fragility fracture in Gaucher disease. Radiology 307 (1), e212779 (2023)

Giacomini, G.; Graziani, C.; Lachi, V.; Bongini, P.; Pancino, N.; Bianchini, M.; Chiarugi, D.; Valleriani, A.; Andreini, P.: A neural network approach for the analysis of reproducible Ribo-seq profiles. Algorithms 15 (8), 274 (2022)

Smith, C.; Patterson-Cross, R.; Woodward, O.; Lewis, J.; Chiarugi, D.; Merkle, F.; Gribble, F.; Reimann, F.; Adriaenssens, A.: A comparative transcriptomic analysis of glucagon-like peptide-1 receptor- and glucose-dependent insulinotropic polypeptide-expressing cells in the hypothalamus. Appetite 174, 106022 (2022)

Furse, S.; Virtue, S.; Snowden, S. G.; Vidal-Puig, A.; Stevenson, P. C.; Chiarugi, D.; Koulman, A.: Dietary PUFAs drive diverse system-level changes in lipid metabolism. Molecular Metabolism 59, 101457 (2022)

Pellegrinelli, V.; Rodriguez-Cuenca, S.; Rouault, C.; Figueroa-Juarez, E.; Schilbert, H.; Virtue, S.; Moreno-Navarrete, J. M.; Bidault, G.; Vázquez-Borrego, M. C.; Dias, A. R. et al.; Pucker, B.; Dale, M.; Campbell, M.; Carobbio, S.; Lin, Y. H.; Vacca, M.; Aron-Wisnewsky, J.; Mora, S.; Masiero, M. M.; Emmanouilidou, A.; Mukhopadhyay, S.; Dougan, G.; den Hoed, M.; Loos, R. J. F.; Fernández-Real, J. M.; Chiarugi, D.; Clément, K.; Vidal-Puig, A.: Dysregulation of macrophage PEPD in obesity determines adipose tissue fibro-inflammation and insulin resistance. Nature Metabolism 4 (4), S. 476 - 494 (2022)

Furse, S.; Fernandez-Twinn, D. S.; Beeson, J. H.; Chiarugi, D.; Ozanne, S. E.; Koulman, A.: A mouse model of gestational diabetes shows dysregulated lipid metabolism post-weaning, after return to euglycaemia. Nutrition & Diabetes 12 (1), 8 (2022)

Furse, S.; Watkins, A. J.; Williams, H. E. L.; Snowden, S. G.; Chiarugi, D.; Koulman, A.: Paternal nutritional programming of lipid metabolism is propagated through sperm and seminal plasma. Metabolomics 18 (2), 13 (2022)

Furse, S.; Fernandez-Twinn, D. S.; Chiarugi, D.; Koulman, A.; Ozanne, S. E.: Lipid metabolism is dysregulated before, during and after pregnancy in a mouse model of gestational diabetes. International Journal of Molecular Sciences 22 (14), 7452 (2021)

Alvarez-Guaita, A.; Patel, S.; Lim, K.; Haider, A.; Dong, L.; Conway, O. J.; Ma, M. K.L.; Chiarugi, D.; Saudek, V.; O’Rahilly, S. et al.; Savage, D. B.: Phenotypic characterization of Adig null mice suggests roles for adipogenin in the regulation of fat mass accrual and leptin secretion. Cell Reports 34 (10), 108810 (2021)

Carobbio, S.; Guenantin, A.-C.; Bahri, M.; Rodriguez-Fdez, S.; Honig, F.; Kamzolas, I.; Samuelson, I.; Long, K.; Awad, S.; Lukovic, D. et al.; Erceg, S.; Bassett, A.; Mendjan, S.; Vallier, L.; Rosen, B. S.; Chiarugi, D.; Vidal-Puig, A.: Unraveling the developmental roadmap toward human brown adipose tissue. Stem Cell Reports 16 (3), S. 641 - 655 (2021)

Hall, Z.; Chiarugi, D.; Charidemou, E.; Leslie, J.; Scott, E.; Pellegrinet, L.; Allison, M.; Mocciaro, G.; Anstee, Q. M.; Evan, G. I. et al.; Hoare, M.; Vidal‐Puig, A.; Oakley, F.; Vacca, M.; Griffin, J. L.: Lipid remodeling in hepatocyte proliferation and hepatocellular carcinoma. Hepatology 73 (3), S. 1028 - 1044 (2021)

Furse, S.; Watkins, A. J.; Hojat, N.; Smith, J.; Williams, H. E. L.; Chiarugi, D.; Koulman, A.: Lipid Traffic Analysis reveals the impact of high paternal carbohydrate intake on offsprings' lipid metabolism. Communications Biology 4 (1), 163 (2021)

Lu, Y.; Basatemur, G.; Scott, I. C.; Chiarugi, D.; Clement, M.; Harrison, J.; Jugdaohsingh, R.; Yu, X.; Newland, S. A.; Jolin, H. E. et al.; Li, X.; Chen, X.; Szymanska, M.; Haraldsen, G.; Palmer, G.; Fallon, P. G.; Cohen, E. S.; McKenzie, A. N.J.; Mallat, Z.: Interleukin-33 signaling controls the development of iron-recycling macrophages. Immunity 52 (5), S. 782 - 793.e5 (2020)

Mulone, A.; Awad, S.; Chiarugi, D.; Aldinucci, M.: Porting the Variant Calling Pipeline for NGS data in cloud-HPC environment. In: Proceedings of the 2023 IEEE 47th Annual Computers, Software, and Applications Conference (COMPSAC). (2023)

Mulone, A.; Colonnelli, I.; Awad, S.; Chiarugi, D.; Aldinucci, M.: Using StreamFlow to port a big data anlysis pipeline in hybrid cloud-HPC environments. Scientific Advisory Board (SAB) Meeting, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany (2023)